Publications

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Book Chapter
S. A. Filichkin and Megraw, M., “DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive Site Sequencing”, in Methods Mol Biol, vol. 1629, 2017, pp. 141-154.
Journal Article
S. Filichkin, Priest, H. D., Megraw, M., and Mockler, T. C., “Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress.”, Curr Opin Plant Biol, vol. 24, pp. 125-35, 2015.
C. Doherty, Friesner, J., Gregory, B., Loraine, A., Megraw, M., Provart, N., R Slotkin, K., Town, C., Assmann, S. M., Axtell, M., Berardini, T., Chen, S., Gehan, M., Huala, E., Jaiswal, P., Larson, S., Li, S., May, S., Michael, T., Pires, C., Topp, C., Walley, J., and Wurtele, E., “Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future”, Plant Direct, vol. 3, no. 1, 2019.
M. G. Ivanchenko, Zhu, J., Wang, B., Medvecká, E., Du, Y., Azzarello, E., Mancuso, S., Megraw, M., Filichkin, S., Dubrovsky, J. G., Friml, J., and Geisler, M., “The cyclophilin A DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation.”, Development, vol. 142, no. 4, pp. 712-21, 2015.
M. G. Ivanchenko, Zhu, J., Wang, B., Medvecká, E., Du, Y., Azzarello, E., Mancuso, S., Megraw, M., Filichkin, S., Dubrovsky, J. G., Friml, J., and Geisler, M., “The cyclophilin A DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation.”, Development, vol. 142, no. 4, pp. 712-21, 2015.
S. A. Filichkin, Cumbie, J. S., Dharmawardhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., “Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.”, Mol Plant, vol. 8, no. 2, pp. 207-27, 2015.
S. A. Filichkin, Cumbie, J. S., J Dharmawadhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., “Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis.”, Mol Plant, 2014.
E. E. Sparks, Drapek, C., Gaudinier, A., Li, S., Ansariola, M., Shen, N., Hennacy, J. H., Zhang, J., Turco, G., Petricka, J. J., Foret, J., Hartemink, A. J., Gordan, R., Megraw, M., Brady, S. M., and Benfey, P. N., “Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors”, Dev Cell, vol. 39, pp. 585-596, 2016.
S. A. Filichkin, Ansariola, M., Fraser, V. N., and Megraw, M., “Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties”, Plant Science, vol. 274, pp. 441-450, 2018.
S. A. Filichkin, Ansariola, M., Fraser, V. N., and Megraw, M., “Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties”, Plant Science, vol. 274, pp. 441-450, 2018.
J. S. Cumbie, Filichkin, S. A., and Megraw, M., “Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana.”, Plant Methods, vol. 11, p. 42, 2015.
V. N. Fraser, Philmus, B., and Megraw, M., “Metabolomics analysis reveals both plant variety and choice of hormone treatment modulate vinca alkaloid production in Catharanthus roseus”, Plant Direct, vol. 4, no. 9, 2020.
J. Friesner, Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., C. Buell, R., Bucksch, A., Busch, W., Demura, T., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Falter-Braun, P., Gehan, M. A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R. J. Cody, Megraw, M., Meyers, B. C., Murray, J. A. H., Provart, N. J., Rhee, S., Smith, R., Spalding, E. P., Taylor, C., Teal, T. K., Tor, ii, K. U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., and Brady, S. M., “The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology”, Plant Physiology, vol. 175, pp. 1499-1509, 2017.
J. Friesner, Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., C. Buell, R., Bucksch, A., Busch, W., Demura, T., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Falter-Braun, P., Gehan, M. A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R. J. Cody, Megraw, M., Meyers, B. C., Murray, J. A. H., Provart, N. J., Rhee, S., Smith, R., Spalding, E. P., Taylor, C., Teal, T. K., Tor, ii, K. U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., and Brady, S. M., “The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology”, Plant Physiology, vol. 175, pp. 1499-1509, 2017.
M. Megraw, Cumbie, J. S., Ivanchenko, M. G., and Filichkin, S. A., “Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.”, Plant Cell, vol. 28, no. 2, pp. 286-303, 2016.