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M. G.  Ivanchenko and Megraw, M., ?NanoCAGE-XL: An Approach to High-Confidence Transcription Start Site Sequencing?, Methods in Molecular Biology, vol. 1830, pp. 225-237, 2018.\par \par M.  Megraw, Cumbie, J. S., Ivanchenko, M. G., and Filichkin, S. A., ?Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.?, Plant Cell, vol. 28, no. 2, pp. 286-303, 2016.\par \par M. G.  Ivanchenko, Zhu, J., Wang, B., Medveck\'e1, E., Du, Y., Azzarello, E., Mancuso, S., Megraw, M., Filichkin, S., Dubrovsky, J. G., Friml, J., and Geisler, M., ?The cyclophilin A DIAGEOTROPICA gene affects auxin transport in both root and shoot to control lateral root formation.?, Development, vol. 142, no. 4, pp. 712-21, 2015.\par \par J. S.  Cumbie, Ivanchenko, M. G., and Megraw, M., ?NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites.?, BMC Genomics, vol. 16, p. 597, 2015.\par \par }