@article {324,
	title = {miRGen 2.0: a database of microRNA genomic information and regulation.},
	journal = {Nucleic Acids Res},
	volume = {38},
	year = {2010},
	month = {2010 Jan},
	pages = {D137-41},
	abstract = {<p>MicroRNAs are small, non-protein coding RNA molecules known to regulate the expression of genes by binding to the 3\&$\#$39;UTR region of mRNAs. MicroRNAs are produced from longer transcripts which can code for more than one mature miRNAs. miRGen 2.0 is a database that aims to provide comprehensive information about the position of human and mouse microRNA coding transcripts and their regulation by transcription factors, including a unique compilation of both predicted and experimentally supported data. Expression profiles of microRNAs in several tissues and cell lines, single nucleotide polymorphism locations, microRNA target prediction on protein coding genes and mapping of miRNA targets of co-regulated miRNAs on biological pathways are also integrated into the database and user interface. The miRGen database will be continuously maintained and freely available at http://www.microrna.gr/mirgen/.</p>},
	keywords = {3{\textquoteright} Untranslated Regions, Algorithms, Animals, Cell Line, Tumor, Computational Biology, Databases, Genetic, Databases, Nucleic Acid, Humans, Information Storage and Retrieval, Internet, Mice, MicroRNAs, Polymorphism, Single Nucleotide, Software, Transcription Factors},
	issn = {1362-4962},
	doi = {10.1093/nar/gkp888},
	author = {Alexiou, Panagiotis and Vergoulis, Thanasis and Gleditzsch, Martin and Prekas, George and Dalamagas, Theodore and Megraw, Molly and Grosse, Ivo and Sellis, Timos and Hatzigeorgiou, Artemis G}
}
@article {329,
	title = {miRGen: a database for the study of animal microRNA genomic organization and function.},
	journal = {Nucleic Acids Res},
	volume = {35},
	year = {2007},
	month = {2007 Jan},
	pages = {D149-55},
	abstract = {<p>miRGen is an integrated database of (i) positional relationships between animal miRNAs and genomic annotation sets and (ii) animal miRNA targets according to combinations of widely used target prediction programs. A major goal of the database is the study of the relationship between miRNA genomic organization and miRNA function. This is made possible by three integrated and user friendly interfaces. The Genomics interface allows the user to explore where whole-genome collections of miRNAs are located with respect to UCSC genome browser annotation sets such as Known Genes, Refseq Genes, Genscan predicted genes, CpG islands and pseudogenes. These miRNAs are connected through the Targets interface to their experimentally supported target genes from TarBase, as well as computationally predicted target genes from optimized intersections and unions of several widely used mammalian target prediction programs. Finally, the Clusters interface provides predicted miRNA clusters at any given inter-miRNA distance and provides specific functional information on the targets of miRNAs within each cluster. All of these unique features of miRGen are designed to facilitate investigations into miRNA genomic organization, co-transcription and targeting. miRGen can be freely accessed at http://www.diana.pcbi.upenn.edu/miRGen.</p>},
	keywords = {Animals, Data Interpretation, Statistical, Databases, Nucleic Acid, Genomics, Humans, Internet, Mice, MicroRNAs, Rats, User-Computer Interface},
	issn = {1362-4962},
	doi = {10.1093/nar/gkl904},
	author = {Megraw, Molly and Sethupathy, Praveen and Corda, Benoit and Hatzigeorgiou, Artemis G}
}
