Publications

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Journal Article
S. Filichkin, Priest, H. D., Megraw, M., and Mockler, T. C., “Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress.”, Curr Opin Plant Biol, vol. 24, pp. 125-35, 2015.
C. Doherty, Friesner, J., Gregory, B., Loraine, A., Megraw, M., Provart, N., R Slotkin, K., Town, C., Assmann, S. M., Axtell, M., Berardini, T., Chen, S., Gehan, M., Huala, E., Jaiswal, P., Larson, S., Li, S., May, S., Michael, T., Pires, C., Topp, C., Walley, J., and Wurtele, E., “Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future”, Plant Direct, vol. 3, no. 1, 2019.
C. Doherty, Friesner, J., Gregory, B., Loraine, A., Megraw, M., Provart, N., R Slotkin, K., Town, C., Assmann, S. M., Axtell, M., Berardini, T., Chen, S., Gehan, M., Huala, E., Jaiswal, P., Larson, S., Li, S., May, S., Michael, T., Pires, C., Topp, C., Walley, J., and Wurtele, E., “Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future”, Plant Direct, vol. 3, no. 1, 2019.
S. A. Filichkin, Cumbie, J. S., Dharmawardhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., “Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.”, Mol Plant, vol. 8, no. 2, pp. 207-27, 2015.
S. A. Filichkin, Cumbie, J. S., J Dharmawadhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., “Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis.”, Mol Plant, 2014.
E. E. Sparks, Drapek, C., Gaudinier, A., Li, S., Ansariola, M., Shen, N., Hennacy, J. H., Zhang, J., Turco, G., Petricka, J. J., Foret, J., Hartemink, A. J., Gordan, R., Megraw, M., Brady, S. M., and Benfey, P. N., “Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors”, Dev Cell, vol. 39, pp. 585-596, 2016.
V. N. Fraser, Philmus, B., and Megraw, M., “Metabolomics analysis reveals both plant variety and choice of hormone treatment modulate vinca alkaloid production in Catharanthus roseus”, Plant Direct, vol. 4, no. 9, 2020.
P. Alexiou, Vergoulis, T., Gleditzsch, M., Prekas, G., Dalamagas, T., Megraw, M., Grosse, I., Sellis, T., and Hatzigeorgiou, A. G., “miRGen 2.0: a database of microRNA genomic information and regulation.”, Nucleic Acids Res, vol. 38, no. Database issue, pp. D137-41, 2010.
J. Friesner, Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., C. Buell, R., Bucksch, A., Busch, W., Demura, T., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Falter-Braun, P., Gehan, M. A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R. J. Cody, Megraw, M., Meyers, B. C., Murray, J. A. H., Provart, N. J., Rhee, S., Smith, R., Spalding, E. P., Taylor, C., Teal, T. K., Tor, ii, K. U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., and Brady, S. M., “The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology”, Plant Physiology, vol. 175, pp. 1499-1509, 2017.
T. Morton, Petricka, J., Corcoran, D. L., Li, S., Winter, C. M., Carda, A., Benfey, P. N., Ohler, U., and Megraw, M., “Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures.”, Plant Cell, vol. 26, no. 7, pp. 2746-60, 2014.
J. J. Petricka, Schauer, M. A., Megraw, M., Breakfield, N. W., J Thompson, W., Georgiev, S., Soderblom, E. J., Ohler, U., Moseley, M. Arthur, Grossniklaus, U., and Benfey, P. N., “The protein expression landscape of the Arabidopsis root.”, Proc Natl Acad Sci U S A, vol. 109, no. 18, pp. 6811-8, 2012.
M. Megraw, Pereira, F., Jensen, S. T., Ohler, U., and Hatzigeorgiou, A. G., “A transcription factor affinity-based code for mammalian transcription initiation.”, Genome Res, vol. 19, no. 4, pp. 644-56, 2009.