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Publications

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Journal Article
M. Megraw, Pereira, F., Jensen, S. T., Ohler, U., and Hatzigeorgiou, A. G., A transcription factor affinity-based code for mammalian transcription initiation., Genome Res, vol. 19, no. 4, pp. 644-56, 2009.
S. M. Brady, Zhang, L., Megraw, M., Martinez, N. J., Jiang, E., Yi, C. S., Liu, W., Zeng, A., Taylor-Teeples, M., Kim, D., Ahnert, S., Ohler, U., Ware, D., Walhout, A. J. M., and Benfey, P. N., A stele-enriched gene regulatory network in the Arabidopsis root., Mol Syst Biol, vol. 7, p. 459, 2011.
M. Megraw, Baev, V., Rusinov, V., Jensen, S. T., Kalantidis, K., and Hatzigeorgiou, A. G., MicroRNA promoter element discovery in Arabidopsis., RNA, vol. 12, no. 9, pp. 1612-9, 2006.
L. Zhang, Volinia, S., Bonome, T., Calin, G. Adrian, Greshock, J., Yang, N., Liu, C. - G., Giannakakis, A., Alexiou, P., Hasegawa, K., Johnstone, C. N., Megraw, M. S., Adams, S., Lassus, H., Huang, J., Kaur, S., Liang, S., Sethupathy, P., Leminen, A., Simossis, V. A., Sandaltzopoulos, R., Naomoto, Y., Katsaros, D., Gimotty, P. A., DeMichele, A., Huang, Q., Bützow, R., Rustgi, A. K., Weber, B. L., Birrer, M. J., Hatzigeorgiou, A. G., Croce, C. M., and Coukos, G., Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer., Proc Natl Acad Sci U S A, vol. 105, no. 19, pp. 7004-9, 2008.
S. A. Filichkin, Cumbie, J. S., Dharmawardhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis., Mol Plant, vol. 8, no. 2, pp. 207-27, 2015.
S. A. Filichkin, Cumbie, J. S., J Dharmawadhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis., Mol Plant, 2014.
C. Doherty, Friesner, J., Gregory, B., Loraine, A., Megraw, M., Provart, N., R Slotkin, K., Town, C., Assmann, S. M., Axtell, M., Berardini, T., Chen, S., Gehan, M., Huala, E., Jaiswal, P., Larson, S., Li, S., May, S., Michael, T., Pires, C., Topp, C., Walley, J., and Wurtele, E., Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future, Plant Direct, vol. 3, no. 1, 2019.