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Publications

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S. Filichkin, Priest, H. D., Megraw, M., and Mockler, T. C., Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress., Curr Opin Plant Biol, vol. 24, pp. 125-35, 2015.
S. A. Filichkin, Cumbie, J. S., J Dharmawadhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis., Mol Plant, 2014.
S. A. Filichkin and Megraw, M., DNase I SIM: A Simplified In-Nucleus Method for DNase I Hypersensitive Site Sequencing, in Methods Mol Biol, vol. 1629, 2017, pp. 141-154.
S. A. Filichkin, Ansariola, M., Fraser, V. N., and Megraw, M., Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties, Plant Science, vol. 274, pp. 441-450, 2018.
S. A. Filichkin, Cumbie, J. S., Dharmawardhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis., Mol Plant, vol. 8, no. 2, pp. 207-27, 2015.
V. N. Fraser, Philmus, B., and Megraw, M., Metabolomics analysis reveals both plant variety and choice of hormone treatment modulate vinca alkaloid production in Catharanthus roseus, Plant Direct, vol. 4, no. 9, 2020.
J. Friesner, Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., C. Buell, R., Bucksch, A., Busch, W., Demura, T., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Falter-Braun, P., Gehan, M. A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., Krouk, G., Ma, S., Markelz, R. J. Cody, Megraw, M., Meyers, B. C., Murray, J. A. H., Provart, N. J., Rhee, S., Smith, R., Spalding, E. P., Taylor, C., Teal, T. K., Tor, ii, K. U., Town, C., Vaughn, M., Vierstra, R., Ware, D., Wilkins, O., Williams, C., and Brady, S. M., The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology, Plant Physiology, vol. 175, pp. 1499-1509, 2017.
M
M. Megraw, Baev, V., Rusinov, V., Jensen, S. T., Kalantidis, K., and Hatzigeorgiou, A. G., MicroRNA promoter element discovery in Arabidopsis., RNA, vol. 12, no. 9, pp. 1612-9, 2006.
M. Megraw, Pereira, F., Jensen, S. T., Ohler, U., and Hatzigeorgiou, A. G., A transcription factor affinity-based code for mammalian transcription initiation., Genome Res, vol. 19, no. 4, pp. 644-56, 2009.
M. Megraw, Cumbie, J. S., Ivanchenko, M. G., and Filichkin, S. A., Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants., Plant Cell, vol. 28, no. 2, pp. 286-303, 2016.
M. Megraw and Hatzigeorgiou, A. G., MicroRNA promoter analysis., Methods Mol Biol, vol. 592, pp. 149-61, 2010.
M. Megraw, Mukherjee, S., and Ohler, U., Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits., Genome Biol, vol. 14, no. 8, p. R85, 2013.
M. Megraw, Sethupathy, P., Corda, B., and Hatzigeorgiou, A. G., miRGen: a database for the study of animal microRNA genomic organization and function., Nucleic Acids Res, vol. 35, no. Database issue, pp. D149-55, 2007.

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